Vanderbilt tied the game at 5-5 with two outs in the bottom of the ninth and scored the game-winning run against Stanford on a wild pitch for the 6-5 victory.
Pinch hitter Spencer Jones singled and scored the game-deciding run in the bottom of the ninth.
Hours before the dramatic ending, the Commodores departed for their game against Stanford on Wednesday afternoon.
Vanderbilt warmed up in the sunshine of Omaha before it gave way to a picturesque evening at TD Ameritrade Park.
The Commodores fended off elimination to remain alive in the College World Series.
Vandy has won multiple games in all five of its College World Series appearances, tied with Oregon State for the longest active streak by any team.
Christian Little, Vanderbilt's 17-year old starter, got the nod against Stanford and went 3.0 innings, allowing four runs, one earned, on four hits with two walks and three strikeouts.
Vanderbilt allowed an unearned run in the top of the first, but held Stanford to just one with Jayson Gonzalez throwing out Tim Tawa at the plate.
Left fielder Javier Vaz kept it a 1-0 Stanford advantage in the second with a diving catch that ended the frame.
After Stanford established a 4-0 advantage in the top of the fourth, Vanderbilt got two back on one swing in the bottom of the frame on a Dominic Keegan home run.
Nick Maldonado relieved Little and went 3.0 innings, allowing one run on four hits and one walk while striking out three.
With Maldonado holding the Cardinal at bay, Vandy scored twice more in the bottom of the sixth to cut the deficit to one run at 5-4.
Keegan's second hit of the night moved Enrique Bradfield Jr. to third base with one out in the bottom of the sixth.
Pinch hitter Tate Kolwyck's single advanced Keegan to second and plated Bradfield Jr. for a 5-3 Stanford advantage.
Kolwyck got the Commodores fired up in the sixth.
One out later in the bottom of the sixth, Parker Noland singled to right to deliver Keegan for a one-run game.
Vanderbilt's defense picked up the momentum in the top of the seventh with a double play to end the frame.
Chris McElvain took over for Maldonado in the seventh and finished with 1.2 innings pitched, one walk and a trio of strikeouts.
Luke Murphy entered in the top of the eighth with the bases loaded and two outs and struck out the Cardinal's Kody Huff, keeping it a 5-4 Stanford lead.
Murphy recorded four outs in the game, three via the strikeout.
Vanderbilt's pitching held Stanford to 2-for-14 with runners in scoring position and stranded 11 runners on base, including six in scoring position.
With two outs in the bottom of the ninth, Vanderbilt's rally began and set the stage for Jones' winning run.
Vaz drew a two-out walk and Jones poked a single to the shortstop, whose throw went wide of first and allowed Vaz to get to third, putting runners on the corners for Bradfield Jr.
Bradfield Jr. shot the first pitch he saw into right, plating Vaz and evening the score.
Bradfield Jr. became the third Vanderbilt leadoff hitter to finish with three hits in CWS game, joining Dansby Swanson in 2014 versus UC Irvine and Tony Kemp in 2011 against North Carolina.
On a 1-0 pitch, Brendan Beck's pitch went to the backstop and Carter Young waved Jones home.
Vanderbilt has won three games this season when trailing after the sixth inning: versus Georgia Tech in the NCAA Nashville Regional, against Arizona State in game one of the College World Series and against Stanford.
The Commodores are the ninth team with multiple walk-off wins in the same College World Series appearance, and the first since Virginia in 2014.
Vanderbilt takes on N.C. State on Friday at 1 p.m. CT on ESPN2.
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